• NEW To help sustain our platform, we now offer self-paced Omics Data Science training coupled with AI assistant, Omics Data Science book and Pro version running on cloud or your server.
  • TIP NetworkAnalyst accepts gene/protein list for biological network analysis. Use ExpressAnalyst or ProteoAnalyst for comprehensive analysis of transcriptomics or proteomics data tables.
  • Please use OmicsForum for discussion and troubleshooting requests so that more people can benefit (invitation code: xialab_omics!).
  • Code refactoring for improved performance (01/23/2026);
  • Upgraded R to the latest version 4.5.2 "[Not] Part in a Rumble" (12/15/2025);
  • Added edge context information for STRING, IntAct, and OmniPath PPI (11/27/2025);
  • Added OmniPath database covering PPI, miRNA-gene, and TF-gene interactions (11/24/2025);
  • Updated IntAct PPI database for several new species (11/15/2025);
  • Updated STRING, DrugBank, CTD (Chemical-gene), TarBase, and DifferentialNet (Tissue PPI) databases (10/15/2025);
Read more ......

Please Cite

  • Zhou, G., Soufan, O., Ewald, J., Hancock, REW, Basu, N. and Xia, J. (2019) "NetworkAnalyst 3.0: a visual analytics platform for comprehensive gene expression profiling and meta-analysis" Nucleic Acids Res. 47 (W1): W234-241.
  • Xia J, Gill E, and Hancock REW (2015) "NetworkAnalyst for Statistical, Visual and Network-based Approaches for Meta-analysis of Expression Data" Nature Protocols 10, 823–844
  • Xia J, Benner MJ, and Hancock REW (2014) "NetworkAnalyst - integrative approaches for protein–protein interaction network analysis and visual exploration" Nucleic Acids Res. 42 (W1): W167-W174.

Acknowledgements