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Please reach us through OmicsForum.
Our Qs & As will benefit the community. Use the invite code to register an account: xialab_omics!
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Added edge context information for STRING, IntAct, and OmniPath PPI (11/27/2025);
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Added OmniPath database covering PPI, miRNA-gene, and TF-gene interactions for human (11/24/2025);
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Updated IntAct PPI database for several new species (11/15/2025);
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Updated STRING, DrugBank, CTD (Chemical-gene), TarBase, and DifferentialNet (Tissue PPI) databases (10/15/2025);
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Bug fix shareable link (03/18/2025);
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Upgraded to PrimeFaces 13.0.10 and Java version 21 (12/16/2024);
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Fixed the issue with Steiner Forest network creation for multiple node types (10/15/2024);
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Enhanced node coloring for signaling network (10/02/2024);
Read more ...... |
Please Cite
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Zhou, G., Soufan, O., Ewald, J., Hancock, REW, Basu, N. and Xia, J. (2019)
"NetworkAnalyst 3.0: a visual analytics platform for comprehensive gene expression profiling and meta-analysis"
Nucleic Acids Research 47 (W1): W234-W241.
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Xia J, Gill E, and Hancock REW (2015) "NetworkAnalyst for Statistical, Visual and Network-based Approaches for
Meta-analysis of Expression Data"
Nature Protocols
10, 823–844
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Xia J, Benner MJ, and Hancock REW (2014) "NetworkAnalyst - integrative approaches for
protein–protein interaction network analysis and visual exploration"
Nucleic Acids Res. 42 (W1): W167-W174.
(PPI data analysis and visualization)
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Xia, J., Lyle, N.H., Mayer, M., Pena, O.M. and Hancock, R.E.W. (2013)
“INVEX - a web-based tool for integrative visualization of expression data”.
Bioinformatics 29 (24), 3232-3234
(gene expression data analysis)
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Xia, J., Fjell, C.D., Mayer, M., Pena, O.M., Wishart, D.S. and Hancock, R.E.W. (2013)
“INMEX - a web-based tool for integrative meta-analysis of expression data”.
Nucleic Acids Research 41, W63-W70.
(meta-analysis)
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