NetworkAnalyst

Network: Background: View: Layout: Node: Edge: Scope: Download: More

Node scope:

Node size:

Submit

Tip: You can keep clicking on a node to increase its size

Edge shape:

Edge color:

Submit

Node scope:

Other nodes:

Submit

Tip: double clicking a node to highlight

	ID	Name	Degree	Betweeness	Expr.

Search Delete

Add label
Delete node
Path: Source
Path: Target

Type:

Node scope:

Node size:

Submit

Tip: You can keep clicking on a node to increase its size

You can hide all node labels to better visualize the network structure

Label display option: Submit

Based on node color (default):

Submit
-------- Or ------

Pick a specific color:

The color scheme will be applied globally

Sequential

Diverging

Submit

Opacity

Submit

Tip: consider reducing opacity value for larger networks to improve viewing experience

Threshold

Submit

	Name	Hits	Pval	AdjP	Color

Query:
Database: Submit Save

	Name	ID	Hits	Color

Query:
Database: Submit
Add Nodes

	Module	Size	Query	P-value	Color

Algorithm: Submit

From To Submit

Enter a list of node IDs or Names (one per row):

Submit

Tip: set a different color to see the effect. You can also use mouse to perform batch Manual selection for dragging purpose only

Right click the PNG image to save as your preferred name

Use with caution - for large networks, scaling to 3X can freeze your browse!

Scaling factor:

Save Cancel

Note:

NetworkAnalyst format saves current state of network layout, node color, node size, etc. It can be uploaded later using "Network Upload" module to load into previously saved state.
Cytoscape format is compatible with Cytoscape. Does not capture current state of the network.

Format:

Save Cancel

Copy to clipboard Cancel

Note, node dragging will be disabled. Click on bundle icon again to enable them again.

Confirm Cancel

Edge bundling is enabled for networks containing 3000 edges or less only.

Cancel

No node is selected! The node with the highest degree value (within the whole network) will be the focal node

Confirm Cancel

Multiple nodes are selected! The node with the highest degree value (within the selected nodes) will be the focal node

Confirm Cancel

Select one type of nodes to collapse. Please make sure the node type is present in the current network

Node type:

Submit

Enter a short description (optional):

Export

Cancel

Thickness

Submit

Tip: Also consider reducing edge opacity value for larger networks to improve viewing experience